To insert a code chunk, press Ctrl + Alt + I in the source pane (top left pane in the default settings of RStudio). The book style is customizable. I was using R Markdown. The title is the question. If you print the output of your R-code it will appear below the code chunk in the source pane and the printed output will appear in the final compiled document. Inline code with R Markdown R Markdown is a well-known tool for reproducible science in R. In this article, I will focus on a few tricks with R inline code. At one point I wanted to show `r expression` in the output, exactly as it is shown here, as an inline code block. Adding citations is an important part of any complete document, this blog in addition to the previous entry about setting up an R markdown document should hopefully get you started. R Markdown output format to pass to render. EPUB). 10.1 Code Chunks. Some time ago, I was writing a vignette for my package WordR. You can easily write and preview the book in RStudio IDE or other editors, and host the book wherever you want (e.g. Value. reference_odt, transition, variant, widescreen When you render, R Markdown 1. runs the R code, embeds results and text into .md file with knitr 2. then converts the .md file into the finished format with pandoc Set a document’s default output format in the YAML header:--- output: html_document --- # Body output value creates html_document html A code chunk will appear: Inside the code chunk you can write and run R-code. For example if I change your style to apa.csl then the following example works fine. I was using R Markdown. R Markdown example showing figures & tables with captions, equations, inline R values and references with a Zotero library - bbest/rmarkdown-example I suspect that this is more common in author/year type citation schemes, so perhaps the numeric schemes don't implement it. Inline code with R Markdown R Markdown is a well-known tool for reproducible science in R. In this article, I will focus on a few tricks with R inline code. The bookdown book says that it uses Pandoc markdown with some additions, but then it says that footnotes are made inline like so: ^[This is a footnote.] The book can be exported to HTML, PDF, and e-books (e.g. Markdown certainly supports pre- and post-citation material. You can access them in the Word template used. This will place the citation inline in the text and add the corresponding reference to a reference list at the end of the output document. Markdown supports adding inline code like this, obtained by wrapping text in backticks: `code here` Alternatively, you can put your inline code between and HTML tags. After reading this book, you will understand how R Markdown documents are transformed from plain text and how you may customize nearly every step of this processing. Markdown Quick Reference R Markdown is an easy-to-write plain text format for creating dynamic documents and reports. Finding stylenames. This book showcases short, practical examples of lesser-known tips and tricks to helps users get the most out of these tools. For the latter a special section called References needs to be specified at the end of the R Markdown script. This is one too! Consider the following markdown code: `This` is an inline code block! Function styles_info() can let you read these styles. Some time ago, I was writing a vignette for my package WordR. A guide to authoring books with R Markdown, including how to generate figures and tables, and insert cross-references, citations, HTML widgets, and Shiny apps in R Markdown. See Using R Markdown to learn more.